SNP Profiles matching NA 387

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
1._RUQ_1057	_	GG	CG	CT	_	_	_	TT	_	_	_	_	CC	GG
2._NA_387	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
3._NA_387	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
4._NA_387	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
5._NA_387	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
6._GC-05-048-1-48	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
7._GC-05-048-1-48	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
8._GC-05-048-1-48	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
9._GC-05-048-1-48	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
10._NA_387	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
11._GC-05-048-1-48	CT	GG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG
12._NA_387	TT	GG	CG	_	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	CT	AC
1._RUQ_1057	_	_	_	_	CC	GG	GG	_	CC	AC	GG	TT	TT	AC
2._NA_387	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
3._NA_387	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
4._NA_387	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
5._NA_387	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
6._GC-05-048-1-48	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
7._GC-05-048-1-48	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
8._GC-05-048-1-48	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
9._GC-05-048-1-48	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
10._NA_387	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
11._GC-05-048-1-48	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC
12._NA_387	TT	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AG	CC	AC	CC	GG	AA	AT	GG	X_X	X_X
1._RUQ_1057	AG	_	AA	CC	AG	CC	AC	CC	GG	AA	_	_	X_X	X_X
2._NA_387	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
3._NA_387	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
4._NA_387	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
5._NA_387	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
6._GC-05-048-1-48	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
7._GC-05-048-1-48	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
8._GC-05-048-1-48	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
9._GC-05-048-1-48	AG	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
10._NA_387	AG	GG	AA	CC	AG	CC	AA	_	GG	AA	AT	GG	X_X	X_X
11._GC-05-048-1-48	AG	GG	AA	CC	AG	CC	AA	_	GG	AA	AT	GG	X_X	X_X
12._NA_387	GG	GG	AA	CC	AG	CC	AC	CC	GG	AA	AT	GG	X_X	X_X

Input profile: NA_387 RUQ_1057

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._NA_387 RUQ_1057

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._NA_387

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 3 > FP

Dapeng Zhang, 2016

3._NA_387

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 2 > FP

Dapeng Zhang, 2016

4._NA_387

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 1 > FP

Dapeng Zhang, 2016

5._NA_387

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._NA_387 GC-05-048-1-48

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._NA_387 GC-05-048-1-48

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

8._NA_387 GC-05-048-1-48

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

9._NA_387 GC-05-048-1-48

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._NA_387

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 5 > FP

Dapeng Zhang, 2016

11._NA_387 GC-05-048-1-48

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

12._NA_387

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25